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Genomics benchmark suite targeting the Arm architecture.

This repository contains both a research plan and a thesis template aimed at PhD students at the Barcelona Supercomputing Center (BSC).

Parallelization of PhysiCell

BioFVM_X is the distributed parallel version of BioFVM v1.1.6 available at (http://biofvm.mathcancer.org/). It uses MPI on top of OpenMP to create a Hybrid i.e. MPI + OpenMP version of BioFVM.

Official EAR project.

Benchmarks and tools for WP3 (eprocessor)

COFI: COmpressed Fm-Index for large k-steps

FEM code to solve micro-structures and for being coupled with macro-scale codes.

TransBioNet CNV Workflow

Small test program that computes Sod's shock tube problem in 2D using FEM techniques. Created to try out ideas for a matrix-free GPU compressible algorithm.