G

genomics

Projects with this topic

  • Variant Interaction Analysis (VIA) is an application for identifying genomic variant interactions related with complex diseases. It uses Multifactor Dimensionality Dimension (MDR), a non-parametric statistical method for detecting and characterizing nonlinear interactions. It runs in a singularity container using Apache Spark for distributing the work, Hadoop File System for distributing the data and Apache ZooKeeper for synchronization. It is coded in Python.

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  • FASTA to SAM/BAM/CRAM generator. Tool for generating alignment files (SAM/BAM/CRAM) from FASTA files

    Topics: genomics fasta sam
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