Merge branch 'develop' into 'master'

add rule to detect related entity with intermediate POS to the right

See merge request !8

src/main/java/es/bsc/inb/nlp/gate/generic/component/util/AnnotationUtil.java

@@ -88,6 +88,58 @@ public  class AnnotationUtil {
 		return closest;
 	}
 	
+	/**
+	 * Return the closes entity with an intermediate POS. This rule apply to the right of the mayor entity.  
+	 * @param doc
+	 * @param fields
+	 * @param finding
+	 * @param type
+	 * @param left_limit
+	 * @param right_limit
+	 * @param avoid_token_between
+	 * @return
+	 */
+	public static Annotation getClosestAnnotationWithPOSPriorityRight(AnnotationSet fields, Annotation finding, String type, Integer right_limit, String avoid_token_between, String POS) {
+		AnnotationSet annotations_type = fields.get(type);
+		Annotation closest = null;
+		Integer token_between_closest = 10000;
+		for (Annotation annotation_type : annotations_type) {
+			AnnotationSet token_between = null;
+			if (annotation_type.getStartNode().getOffset() > finding.getEndNode().getOffset()) {
+				//after the finding 
+				token_between =  fields.get("Token", finding.getEndNode().getOffset(), annotation_type.getStartNode().getOffset());
+				if(token_between.size()<=right_limit && tokensIncludePOS(token_between, POS)) {
+					//review closest of rule
+					if(token_between!=null && token_between.size()<token_between_closest) {
+						closest = annotation_type;
+						token_between_closest = token_between.size();
+					}
+				}
+			}
+		}
+		return closest;
+	}
+	
+	
+	/**
+	 * Return try if the list of token has a POS 
+	 * @param token_between
+	 * @param pOS
+	 * @return
+	 */
+	private static boolean tokensIncludePOS(AnnotationSet token_between, String POS) {
+		if(POS==null || POS.contentEquals("")) {
+			return false;
+		}else { 
+			for (Annotation annotation : token_between) {
+				if(annotation.getFeatures().get("pos").toString().startsWith(POS)) {
+					return true;
+				}
+			}
+		}	
+		return false;
+	}
+
 	/**
 	 * 
 	 * @param token_between