add more data to json

src/main/java/es/bsc/inb/ades/export/json/main/App.java

@@ -8,8 +8,11 @@ import java.nio.file.DirectoryStream;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.nio.file.Paths;
+import java.text.DateFormat;
+import java.text.SimpleDateFormat;
 import java.util.ArrayList;
 import java.util.Collections;
+import java.util.Date;
 import java.util.HashMap;
 import java.util.HashSet;
 import java.util.List;
@@ -206,8 +209,8 @@ public class App {
 		
 		JsonObject section = new JsonObject();
 		section.addProperty("name", "document");
-		Set<String> types = Stream.of("FINDING","SEX","SPECIMEN","GROUP","DOSE","MANIFESTATION_FINDING","RISK_LEVEL","NO_TREATMENT_RELATED_TRIGGER",
-				"TREATMENT_RELATED_TRIGGER","STUDY_DOMAIN","STUDY_DAY_FINDING","STUDY_TESTCD", "ROUTE_OF_ADMINISTRATION","MODE_OF_ACTION","STATISTICAL_SIGNIFICANCE","CYPS").collect(Collectors.toCollection(HashSet::new));
+		Set<String> types = Stream.of("PRETOX_REL","FINDING","SEX","SPECIMEN","GROUP","DOSE","MANIFESTATION_FINDING","RISK_LEVEL","NO_TREATMENT_RELATED_TRIGGER",
+				"TREATMENT_RELATED_TRIGGER","STUDY_DOMAIN","STUDY_DAY_FINDING","STUDY_TESTCD", "STATISTICAL_SIGNIFICANCE").collect(Collectors.toCollection(HashSet::new));
 		JsonObject entities = new JsonObject();
 		AnnotationSet as = doc.getAnnotations(annotationSet).get(types);
 	    for (String type : as.getAllTypes()) {
@@ -289,9 +292,13 @@ public class App {
 	    annotated_document=null;
 	    
 	    //document text
+	    DateFormat dateFormat = new SimpleDateFormat("yyyy/MM/dd HH:mm:ss");
+    	Date date = new Date();
     	JsonObject text_document = new JsonObject();
     	text_document.addProperty("id", id_document);
     	text_document.addProperty("name", name);
+    	text_document.addProperty("fileName", name);
+    	text_document.addProperty("processDate", dateFormat.format(date));
     	text_document.addProperty("text", plainText);
 		//write to file document text
     	java.io.Writer writer2 = new java.io.BufferedWriter(new java.io.OutputStreamWriter(new FileOutputStream(outputTextFile, false)));