Merge branch 'master' of https://gitlab.bsc.es/inb/etransafe/ades-export-to-json.git

.gitlab-ci.yml

+variables:
+  DOCKER_USER: javicorvi
+  DOCKER_BUILD: $DOCKER_USER/$CI_PROJECT_NAME:$CI_COMMIT_REF_NAME
+stages:
+  - build
+build_docker_image:
+  stage: build
+  only:
+    - tags
+  script:
+    - docker login -u javicorvi -p $DOCKER_PASS
+    - docker build -t $DOCKER_BUILD .
+    - docker push $DOCKER_BUILD
+  tags:
+    - build
\ No newline at end of file

CHANGELOG

+# Change Log
+
+## Version 1.0, 2020-03-03
+
+First version of the component.

README.md

@@ -6,11 +6,13 @@ This component export the treatment-related findings annotated in XML GATE forma
 
 This component is only used inside the treatment-related findings pipeline because is tired up to that specific domain.
 
-## For clone this component
 
-	git clone --depth 1 https://github.com/inab/docker-textmining-tools.git ades-export-to-json
-	cd ades-export-to-json
-	git filter-branch --prune-empty --subdirectory-filter ades-export-to-json HEAD
+## Actual Version: 0.1, 2020-03-04
+## [Changelog](https://gitlab.bsc.es/inb/etransafe/ades-export-to-json/blob/master/CHANGELOG) 
+## Docker
+
+javicorvi/ades-export-to-json
+
 
 ## Build and Run the Docker 
 

src/main/java/es/bsc/inb/ades/export/json/main/App.java

@@ -189,7 +189,7 @@ public class App {
 		document.addProperty("id", System.currentTimeMillis());
 		JsonObject section = new JsonObject();
 		section.addProperty("name", "document");
-		Set<String> types = Stream.of("FINDING","SEX","SPECIMEN","GROUP","DOSE","DOSE_DURATION","DOSE_QUANTITY","DOSE_FREQUENCY","MANIFESTATION_FINDING","RISK_LEVEL","NO_TREATMENT_RELATED_TRIGGER",
+		Set<String> types = Stream.of("FINDING","SEX","SPECIMEN","GROUP","DOSE","MANIFESTATION_FINDING","RISK_LEVEL","NO_TREATMENT_RELATED_TRIGGER",
 				"TREATMENT_RELATED_TRIGGER","STUDY_DOMAIN","STUDY_DAY_FINDING","STUDY_TESTCD", "ROUTE_OF_ADMINISTRATION","MODE_OF_ACTION","STATISTICAL_SIGNIFICANCE","CYPS").collect(Collectors.toCollection(HashSet::new));
 		JsonObject entities = new JsonObject();
 		AnnotationSet as = doc.getAnnotations(annotationSet).get(types);