refactorization of packages and swagger

pom.xml

@@ -68,7 +68,12 @@
    			<artifactId>spring-security-oauth2-jose</artifactId>
 		</dependency> 
         
-        
+         <dependency>
+		    <groupId>org.springdoc</groupId>
+		    <artifactId>springdoc-openapi-ui</artifactId>
+		    <version>1.6.9</version>
+		</dependency>
+		
         <dependency>
 		    <groupId>com.fasterxml.jackson.core</groupId>
 		    <artifactId>jackson-databind</artifactId>

src/main/java/es/bsc/inb/ades/rest/api/App.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/App.java

-package es.bsc.inb.ades.rest.api;
+package es.bsc.inb.etransafe.pretox.rest.api;
 
 import org.springframework.boot.SpringApplication;
 import org.springframework.boot.autoconfigure.SpringBootApplication;
@@ -6,7 +6,7 @@ import org.springframework.context.annotation.ComponentScan;
 
 
 @SpringBootApplication
-@ComponentScan("es.bsc.inb.ades")
+@ComponentScan("es.bsc.inb.etransafe")
 public class App {
 
 	public static void main(String[] args) {

src/main/java/es/bsc/inb/ades/rest/api/config/Config.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/config/Config.java

-package es.bsc.inb.ades.rest.api.config;
+package es.bsc.inb.etransafe.pretox.rest.api.config;
 
 import org.springframework.context.annotation.Configuration;
 

src/main/java/es/bsc/inb/ades/rest/api/config/PersistenceJPAConfig.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/config/PersistenceJPAConfig.java

-package es.bsc.inb.ades.rest.api.config;
+package es.bsc.inb.etransafe.pretox.rest.api.config;
 
 import org.springframework.context.annotation.Configuration;
 import org.springframework.context.annotation.PropertySource;

src/main/java/es/bsc/inb/ades/rest/api/controllers/DocumentController.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/controllers/DocumentController.java

-package es.bsc.inb.ades.rest.api.controllers;
+package es.bsc.inb.etransafe.pretox.rest.api.controllers;
 
-import java.security.Principal;
 import java.util.List;
 
-import javax.servlet.http.HttpServletRequest;
-
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.http.HttpHeaders;
 import org.springframework.http.HttpStatus;
 import org.springframework.http.MediaType;
 import org.springframework.http.ResponseEntity;
-import org.springframework.security.oauth2.server.resource.authentication.JwtAuthenticationToken;
 import org.springframework.web.bind.annotation.CrossOrigin;
 import org.springframework.web.bind.annotation.PathVariable;
 import org.springframework.web.bind.annotation.RequestMapping;
 import org.springframework.web.bind.annotation.RestController;
 
-import es.bsc.inb.ades.rest.api.model.Document;
-import es.bsc.inb.ades.rest.api.model.DocumentAnnotations;
-import es.bsc.inb.ades.rest.api.model.DocumentTracking;
-import es.bsc.inb.ades.rest.api.model.Status;
-import es.bsc.inb.ades.rest.api.services.DocumentService;
+import es.bsc.inb.etransafe.pretox.rest.api.model.Document;
+import es.bsc.inb.etransafe.pretox.rest.api.model.DocumentAnnotations;
+import es.bsc.inb.etransafe.pretox.rest.api.model.DocumentTracking;
+import es.bsc.inb.etransafe.pretox.rest.api.model.Status;
+import es.bsc.inb.etransafe.pretox.rest.api.services.DocumentService;
 
 
 @RestController
 @CrossOrigin(origins="*")
 public class DocumentController {
 	
-	
-	
 	@Autowired
 	public DocumentService documentService;
 	
@@ -52,11 +46,6 @@ public class DocumentController {
 		return documentService.findDocumentSRDomainByDocumentId(id);
 	}
 	
-//	@RequestMapping("/documents/{id}")
-//	public Document find2(@PathVariable(value="id") Long id) {
-//		return documentService.findByDocumentId2(id);
-//	}
-	
 	@RequestMapping("/documents/{id}/finding/{findingId}")
 	public String findFinding(@PathVariable(value="id") Long id, @PathVariable(value="findingId") Integer findingId) {
 		String snippet = documentService.findFindingEvidenceByDocumentIdAndFindingId(id, findingId);
@@ -126,12 +115,7 @@ public class DocumentController {
 		String snippet = documentService.findTextByDocumentId(id);
 		return snippet;
 	}
-	
-//	@RequestMapping("/documents/{id}/finding2/{findingId}")
-//	public String findFinding2(@PathVariable(value="id") Long id, @PathVariable(value="findingId") Integer findingId) {
-//		String snippet = documentService.findTextSnippetByDocumentIdAndFindingId2(id, findingId);
-//		return snippet;
-//	}
+
 	
 	@RequestMapping(value = "/documents/export/{id}")
     public ResponseEntity<byte[]> generateReport(@PathVariable("id") long documentId){

src/main/java/es/bsc/inb/ades/rest/api/controllers/FileController.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/controllers/FileController.java

 
-package es.bsc.inb.ades.rest.api.controllers;
+package es.bsc.inb.etransafe.pretox.rest.api.controllers;
 
 
 import java.util.ArrayList;
@@ -21,9 +21,9 @@ import org.springframework.web.bind.annotation.RequestParam;
 import org.springframework.web.multipart.MultipartFile;
 import org.springframework.web.servlet.mvc.method.annotation.MvcUriComponentsBuilder;
 
-import es.bsc.inb.ades.rest.api.model.FileMessage;
-import es.bsc.inb.ades.rest.api.model.FileModel;
-import es.bsc.inb.ades.rest.api.services.FileService;
+import es.bsc.inb.etransafe.pretox.rest.api.model.FileMessage;
+import es.bsc.inb.etransafe.pretox.rest.api.model.FileModel;
+import es.bsc.inb.etransafe.pretox.rest.api.services.FileService;
 
 @Controller
 @CrossOrigin("*")

src/main/java/es/bsc/inb/ades/rest/api/controllers/LivenessController.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/controllers/LivenessController.java

-package es.bsc.inb.ades.rest.api.controllers;
+package es.bsc.inb.etransafe.pretox.rest.api.controllers;
 
 import org.springframework.web.bind.annotation.CrossOrigin;
 import org.springframework.web.bind.annotation.GetMapping;

src/main/java/es/bsc/inb/ades/rest/api/model/Action.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/Action.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 public enum Action {
 	 MOVE, REJECT, ACCEPT, EXPORT_SR_FINDING, NOT_EXPORT_SR_FINDING

src/main/java/es/bsc/inb/ades/rest/api/model/Annotation.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/Annotation.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 import java.util.ArrayList;
 import java.util.List;
 
 import org.springframework.data.mongodb.core.mapping.Field;
 
-import es.bsc.inb.ades.rest.api.util.VisualizationHTMLUtil;
+import es.bsc.inb.etransafe.pretox.rest.api.util.VisualizationHTMLUtil;
 
 /**
  * 

src/main/java/es/bsc/inb/ades/rest/api/model/Document.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/Document.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 import java.util.List;
 

src/main/java/es/bsc/inb/ades/rest/api/model/DocumentAnnotations.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/DocumentAnnotations.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 import java.util.ArrayList;
 import java.util.List;

src/main/java/es/bsc/inb/ades/rest/api/model/DocumentTracking.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/DocumentTracking.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 import java.util.ArrayList;
 import java.util.List;

src/main/java/es/bsc/inb/ades/rest/api/model/Feature.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/Feature.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 /**
  * 
  * @author jcorvi

src/main/java/es/bsc/inb/ades/rest/api/model/FileMessage.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/FileMessage.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 
 public class FileMessage {

src/main/java/es/bsc/inb/ades/rest/api/model/FileModel.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/FileModel.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 /**
  * File model

src/main/java/es/bsc/inb/ades/rest/api/model/Finding.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/Finding.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 import java.util.ArrayList;
 import java.util.List;

src/main/java/es/bsc/inb/ades/rest/api/model/RecordState.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/RecordState.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 public enum RecordState {
 

src/main/java/es/bsc/inb/ades/rest/api/model/RelevantSentence.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/RelevantSentence.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 import java.util.ArrayList;
 import java.util.List;

src/main/java/es/bsc/inb/ades/rest/api/model/SRDomainFinding.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/SRDomainFinding.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 import org.apache.tomcat.util.bcel.classfile.Constant;
 
-import es.bsc.inb.ades.rest.api.util.Constants;
+import es.bsc.inb.etransafe.pretox.rest.api.util.Constants;
 
 /**
  * This class describes a finding in SR-Domain format.

src/main/java/es/bsc/inb/ades/rest/api/model/Status.java → src/main/java/es/bsc/inb/etransafe/pretox/rest/api/model/Status.java

-package es.bsc.inb.ades.rest.api.model;
+package es.bsc.inb.etransafe.pretox.rest.api.model;
 
 public enum Status {
 	 DRAFT, IN_PROGRESS, FINISHED, CLOSED