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etransafe-text-mining-pipeline

Update pipeline.nf

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Status Job ID Name Coverage
  Run
failed #107693
build
run_text_mining_pipeline

00:00:03

 
Name Stage Failure
failed
run_text_mining_pipeline Run 
WARN: Access to undefined parameter `paramsout` -- Initialise it to a default value eg. `params.paramsout = some_value`
[Config Wrapper] Saving current parameters to /home/jcorvi/eTRANSAFE_DATA/workshop_data/pipeline_test/28-09-2020/execution-results/params_pretox_pipeline_28-09-2020_11_08_03.json
                 This file can be used to input parameters providing 
                   '-params-file "/home/jcorvi/eTRANSAFE_DATA/workshop_data/pipeline_test/28-09-2020/execution-results/params_pretox_pipeline_28-09-2020_11_08_03.json"'
                   to nextflow when running the workflow.
ERROR ~ No such file: /home/jcorvi/eTRANSAFE_DATA/workshop_data/pipeline_test/28-09-2020/execution-results/params_pretox_pipeline_28-09-2020_11_08_03.json

 -- Check script 'pipeline.nf' at line: 227 or see '.nextflow.log' file for more details
ERROR: Job failed: exit status 1