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etransafe-text-mining-pipeline
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INB
eTRANSAFE
etransafe-text-mining-pipeline
Commits
e78d480c
Commit
e78d480c
authored
Sep 28, 2020
by
jcorvi
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Update run_gitlab-runner.sh
parent
affac9b9
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run_gitlab-runner.sh
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e78d480c
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@@ -31,9 +31,9 @@ db_port=xxxxx
db_user
=
xxxxx
db_password
=
xxxxx
#set the database name
db_name
=
xxxxxx
db_name
=
etransafe
#set the collection prefix
db_collection_prefix
=
xxxxx
db_collection_prefix
=
dev
db_uri
=
"mongodb://127.0.0.1:27018"
#command
$nextflow_path
run
$pipeline_path
--inputDir
$input_dir
--baseDir
$base_dir
--db_uri
$db_uri
--db_name
$db_name
--db_collection_prefix
$db_collection_prefix
-with-report
$base_dir
/report.html
-with-trace
-with-timeline
$base_dir
/timeline.html
-name
$pipeline_name
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