Commit ba02ae40 authored by jcorvi's avatar jcorvi

Update run_gitlab-runner.sh

parent 89b77168
Pipeline #12389 passed with stage
in 2 minutes and 54 seconds
......@@ -37,3 +37,6 @@ db_collection_prefix="dev"`date '+%d-%m-%Y'`
db_uri="mongodb://127.0.0.1:27018"
#command
$nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
cp $base_dir/report.html report.html
ls -l
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