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etransafe-text-mining-pipeline
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INB
eTRANSAFE
etransafe-text-mining-pipeline
Commits
7955c3af
Commit
7955c3af
authored
Sep 28, 2020
by
jcorvi
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Update run_gitlab-runner.sh
parent
ba02ae40
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run_gitlab-runner.sh
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7955c3af
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@@ -38,5 +38,8 @@ db_uri="mongodb://127.0.0.1:27018"
#command
$nextflow_path
run
$pipeline_path
--inputDir
$input_dir
--baseDir
$base_dir
--db_uri
$db_uri
--db_name
$db_name
--db_collection_prefix
$db_collection_prefix
-with-report
$base_dir
/report.html
-with-trace
-with-timeline
$base_dir
/timeline.html
-name
$pipeline_name
cp
$base_dir
/report.html report.html
ls
-l
git branch
git add report.html
git status
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