Update run_gitlab-runner.sh

run_gitlab-runner.sh

@@ -9,8 +9,6 @@ pipeline_path="/home/jcorvi/projects/etransafe/etransafe-text-mining-pipeline/pi
 input_dir="/home/jcorvi/eTRANSAFE_DATA/workshop_data/gitlab-ci/input/"
 #set the home/work dir of the pipeline
 base_dir="/home/jcorvi/eTRANSAFE_DATA/workshop_data/gitlab-ci/"`date '+%d-%m-%Y'`
-echo "prueba de echo y variable de entorno"
-echo $DB_SERVER
 #Database connection details
 #set server and port
 db_server=$DB_SERVER
@@ -25,6 +23,6 @@ db_collection_prefix="dev"`date '+%d-%m-%Y'`
 
 #The complete mongo uri
 db_uri="mongodb://"$db_user":"$db_password"@"$db_server":"$db_port"/?authSource="$db_name"&authMechanism=SCRAM-SHA-1"
-
+echo $db_uri
 #command
 $nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name