Commit 7043d299 authored by jcorvi's avatar jcorvi

Update run_gitlab-runner.sh

parent af34ea55
......@@ -36,7 +36,7 @@ db_name=etransafe
db_collection_prefix="dev"`date '+%d-%m-%Y'`
db_uri="mongodb://127.0.0.1:27018"
#command
$nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
#$nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
cp $base_dir/report.html report.html
git config user.email "javier.corvi@bsc.es"
git config user.name "jcorvi"
......
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