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etransafe-text-mining-pipeline
Commit 3757c852 authored by jcorvi's avatar jcorvi
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Update run_gitlab-runner.sh

parent 498cad94
Pipeline #12391 failed with stage
    in 2 minutes and 59 seconds
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    run_gitlab-runner.sh
    View file @ 3757c852
    ......@@ -39,6 +39,8 @@ db_uri="mongodb://127.0.0.1:27018"
    $nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
    cp $base_dir/report.html report.html
    git branch
    echo $CI_COMMIT_REF_NAME
    git add report.html
    git commit -m "commiting pipeline results"
    git status
    git push origin develop
    git push origin HEAD:$CI_COMMIT_REF_NAME
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