Commit 3757c852 authored by jcorvi's avatar jcorvi

Update run_gitlab-runner.sh

parent 498cad94
Pipeline #12391 failed with stage
in 2 minutes and 59 seconds
......@@ -39,6 +39,8 @@ db_uri="mongodb://127.0.0.1:27018"
$nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
cp $base_dir/report.html report.html
git branch
echo $CI_COMMIT_REF_NAME
git add report.html
git commit -m "commiting pipeline results"
git status
git push origin develop
git push origin HEAD:$CI_COMMIT_REF_NAME
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