Commit 29fd69a2 authored by jcorvi's avatar jcorvi


parent e4eec2cd
...@@ -38,12 +38,13 @@ db_uri="mongodb://" ...@@ -38,12 +38,13 @@ db_uri="mongodb://"
#command #command
$nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name $nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
cp $base_dir/report.html report.html cp $base_dir/report.html report.html
git config "" #git config ""
git config "CI Pipeline" #git config "jcorvi"
git config --global http.sslverify "false" #git config --global http.sslverify "false"
git branch #git branch
git add report.html #git add report.html
git commit -m "commiting pipeline results" #git commit -m "commiting pipeline results"
git status #git status
git push origin HEAD:$CI_COMMIT_REF_NAME #git push origin HEAD:$CI_COMMIT_REF_NAME
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