Commit 29fd69a2 authored by jcorvi's avatar jcorvi


parent e4eec2cd
......@@ -38,12 +38,13 @@ db_uri="mongodb://"
$nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
cp $base_dir/report.html report.html
git config ""
git config "CI Pipeline"
git config --global http.sslverify "false"
git branch
git add report.html
git commit -m "commiting pipeline results"
git status
git push origin HEAD:$CI_COMMIT_REF_NAME
#git config ""
#git config "jcorvi"
#git config --global http.sslverify "false"
#git branch
#git add report.html
#git commit -m "commiting pipeline results"
#git status
#git push origin HEAD:$CI_COMMIT_REF_NAME
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