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INB
eTRANSAFE
etransafe-text-mining-pipeline
Commits
29fd69a2
Commit
29fd69a2
authored
Sep 28, 2020
by
jcorvi
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Update run_gitlab-runner.sh
parent
e4eec2cd
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run_gitlab-runner.sh
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29fd69a2
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@@ -38,12 +38,13 @@ db_uri="mongodb://127.0.0.1:27018"
#command
$nextflow_path
run
$pipeline_path
--inputDir
$input_dir
--baseDir
$base_dir
--db_uri
$db_uri
--db_name
$db_name
--db_collection_prefix
$db_collection_prefix
-with-report
$base_dir
/report.html
-with-trace
-with-timeline
$base_dir
/timeline.html
-name
$pipeline_name
cp
$base_dir
/report.html report.html
git config user.email
"javier.corvi@bsc.es"
git config user.name
"CI Pipeline"
git config
--global
http.sslverify
"false"
git branch
echo
$CI_COMMIT_REF_NAME
git add report.html
git commit
-m
"commiting pipeline results"
git status
git push origin HEAD:
$CI_COMMIT_REF_NAME
#git config user.email "javier.corvi@bsc.es"
#git config user.name "jcorvi"
#git config --global http.sslverify "false"
#git branch
#echo $CI_COMMIT_REF_NAME
#git add report.html
#git commit -m "commiting pipeline results"
#git status
#git push origin HEAD:$CI_COMMIT_REF_NAME
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