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etransafe-text-mining-pipeline
Commit 1018170a authored by jcorvi's avatar jcorvi
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pipeline change

parent 584489d8
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run.sh
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......@@ -6,9 +6,9 @@ nextflow_path="/home/jcorvi/nextflow_installation/nextflow"
#set the pipeline file
pipeline_path="/home/jcorvi/projects/etransafe/etransafe-text-mining-pipeline/pipeline.nf"
#set the input dir
input_dir="/home/jcorvi/eTRANSAFE_DATA/workshop_data/pipeline_test/input/"
input_dir="/home/jcorvi/eTRANSAFE_DATA/workshop_data/gitlab-ci/input/"
#set the home/work dir of the pipeline
base_dir="/home/jcorvi/eTRANSAFE_DATA/workshop_data/pipeline_test/"`date '+%d-%m-%Y'`
base_dir="/home/jcorvi/eTRANSAFE_DATA/workshop_data/gitlab-ci/"`date '+%d-%m-%Y'`
#Database connection details
#set server and port
......
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