Commit 0b4f5d04 authored by jcorvi's avatar jcorvi

Update run_gitlab-runner.sh

parent 77c0cffe
Pipeline #12380 failed with stage
in 1 second
......@@ -23,6 +23,6 @@ db_collection_prefix="dev"`date '+%d-%m-%Y'`
#The complete mongo uri
db_uri="mongodb://"$db_user":"$db_password"@"$db_server":"$db_port"/?authSource="$db_name"&authMechanism=SCRAM-SHA-1"
echo $db_uri
#echo $db_uri
#command
$nextflow_path run $pipeline_path --inputDir $input_dir --baseDir $base_dir --db_uri $db_uri --db_name $db_name --db_collection_prefix $db_collection_prefix -with-report $base_dir/report.html -with-trace -with-timeline $base_dir/timeline.html -name $pipeline_name
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment