Commit d661d286 authored by Albert Hornos Vidal's avatar Albert Hornos Vidal
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content: adds VEO reports table in genomics section

parent c46a17f9
{"entity":"Sequences submitted by country summary","timestamp":"2021-10-14 15:42:06.710428","links":{"self":{"href":"https:\/\/docs.google.com\/spreadsheets\/d\/e\/2PACX-1vRgouM0eO0qKvyi43S72V-x3U80vru5dOkvL9jI9lO0wYeY6A11TK5UPWlcYCCevlm7isZLzaiLfsIW\/pub?gid=677425267&single=true&output=tsv"},"origin":{"href":"https:\/\/docs.google.com\/spreadsheets\/d\/e\/2PACX-1vRgouM0eO0qKvyi43S72V-x3U80vru5dOkvL9jI9lO0wYeY6A11TK5UPWlcYCCevlm7isZLzaiLfsIW\/pub?gid=677425267&single=true&output=tsv"}},"countries_counter":116,"countries_summary":[{"country":"USA","sequences_submitted":"847462","raw_sequences_submitted":"484219"},{"country":"United 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Republic","sequences_submitted":"4","raw_sequences_submitted":"14"},{"country":"Guam","sequences_submitted":"3","raw_sequences_submitted":""},{"country":"Mali","sequences_submitted":"3","raw_sequences_submitted":""},{"country":"Cuba","sequences_submitted":"2","raw_sequences_submitted":""},{"country":"Singapore","sequences_submitted":"2","raw_sequences_submitted":"1"},{"country":"Belarus","sequences_submitted":"2","raw_sequences_submitted":""},{"country":"Romania","sequences_submitted":"2","raw_sequences_submitted":"1"},{"country":"Cambodia","sequences_submitted":"2","raw_sequences_submitted":"1"},{"country":"Croatia","sequences_submitted":"1","raw_sequences_submitted":"30"},{"country":"Zambia","sequences_submitted":"1","raw_sequences_submitted":""},{"country":"Cameroon","sequences_submitted":"1","raw_sequences_submitted":"1"},{"country":"Ireland","sequences_submitted":"","raw_sequences_submitted":"33473"},{"country":"Angola","sequences_submitted":"","raw_sequences_submitted":"1233"},{"country":"United Arab Emirates","sequences_submitted":"","raw_sequences_submitted":"1067"},{"country":"Malawi","sequences_submitted":"","raw_sequences_submitted":"958"},{"country":"Mozambique","sequences_submitted":"","raw_sequences_submitted":"545"},{"country":"not applicable","sequences_submitted":"","raw_sequences_submitted":"280"},{"country":"Latvia","sequences_submitted":"","raw_sequences_submitted":"133"},{"country":"not collected","sequences_submitted":"","raw_sequences_submitted":"96"},{"country":"NA","sequences_submitted":"","raw_sequences_submitted":"86"},{"country":"State of Palestine","sequences_submitted":"","raw_sequences_submitted":"69"},{"country":"missing","sequences_submitted":"","raw_sequences_submitted":"34"},{"country":"Not Applicable","sequences_submitted":"","raw_sequences_submitted":"32"},{"country":"Na","sequences_submitted":"","raw_sequences_submitted":"9"}]}
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......@@ -24,7 +24,12 @@
<div class="tab-content mt-5">
<div class="tab-pane fade active show" id='genomic-resources-content' role="tabpanel" aria-labelledby='genomic-resources-tab'>
<article>
<h2>Spain sequencing efforts</h2>
<h2>Geographical source of SARS-CoV-2 sequence data </h2>
<p>
The world map and table below provide a snapshot of the number of SARS-CoV-2 raw sequences submitted by country.
<br />
The original source of data is the <a href="https://www.covid19dataportal.org/statistics" target="_blank">COVID-19 Data Portal</a> statistics section.
</p>
<div class="d-block clearfix">
<img src="/images/diagrams/raw_sequences_submitted_by_country.png" class="rounded float-left mr-5 d-block" style="max-width:50%" alt="Raw sequences submitted by Country">
<table class="table table-responsive d-inline">
......@@ -35,28 +40,89 @@
<tbody>
<tr>
<td>United Kingdom</td>
<td class="text-center">1,057,489</td>
<td>1,057,489</td>
</tr>
<tr>
<td>USA</td>
<td class="text-center">484,219</td>
<td>484,219</td>
</tr>
<tr>
<td>Ireland</td>
<td class="text-center">33,473</td>
<td>33,473</td>
</tr>
<tr>
<td>Spain</td>
<td class="text-center">22,135</td>
<td>22,135</td>
</tr>
<tr>
<td>Australia</td>
<td class="text-center">15,629</td>
<td>15,629</td>
</tr>
</tbody>
</table>
</div>
</article>
<article>
</article>
<h2>VEO consortium reports</h2>
<p>
The <a href="https://www.veo-europe.eu/" target="_blank">VEO consortium</a> (Versatile Emerging infectious disease Observatory) submits monthly reports to the European Commission on mutations and variation in publicly shared SARS-CoV-2 raw sequencing data.
<br />
You can browse all previous VEO reports in the table below.
<br />
If you would like to receive the VEO reports straight to your inbox, please send an email to <a href="mailto:veo.europe@erasmusmc.nl">veo.europe@erasmusmc.nl</a> with ‘VEO COVID-19 Report’ in the subject line.
</p>
<table class="table table-responsive table-sm">
<thead>
<th>Report</th>
<th>News</th>
<th>Download</th>
</thead>
<tbody>
<tr>
<td>First report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={C8603A16-8104-475E-9E6B-985BCCB67136}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-v02.pdf?la=da&hash=C20457CBD60493484B3E0F799DC2384FECE724F3">Download report</a></td>
</tr>
<tr>
<td>Second report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={295B1E0E-FB34-4ADA-B8DB-17C125B12971}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-2-final.pdf?la=da&hash=04C7DECB4B7713D44CE13CC31BCD7D1BBD68A391">Download report</a></td>
</tr>
<tr>
<td>Third report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={E4321352-62C6-47A8-9977-EF88DA13A481}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-3-final.pdf?la=da&hash=FB7DFC9E426B97A92EAFA516F85CFDF8D0B04B4A">Download report</a></td>
</tr>
<tr>
<td>Fourth report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={F96C565D-D211-4BC3-A751-7330ED55CDB3}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-4-final.pdf?la=da&hash=1120416E0F29FC5209AC1E4BAB027E766FC6D576">Download report</a></td>
</tr>
<tr>
<td>Fifth report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={B114E6E9-F4D4-4900-BDD4-2C2E546C0EA5}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-5-final.pdf?la=da&hash=8A01A87944E2E4D4DC0665968DFB9AD5673E7BFA">Download report</a></td>
</tr>
<tr>
<td>Sixth report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={0AB6C30A-4CED-4F71-88D6-058998C2673E}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-6-final.pdf?la=da&hash=38280825E8C0274822FC35DAD0B658939A13DB5A">Download report</a></td>
</tr>
<tr>
<td>Seventh report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={F636F235-DE3E-4BCC-8772-068017100945}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-7-final.pdf?la=da&hash=9571234B1BA6CC166DC2B20C99A403E1C0156710">Download report</a></td>
</tr>
<tr>
<td>Eight report</td>
<td><a href="https://www.veo-europe.eu/news/Nyhed?id={9F445038-C721-459F-9E90-CACF00FCC72E}" target="_blank">News</a></td>
<td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-8-final.pdf?la=da&hash=ED6ECE05BFE6D0AD51B00EBB7E7A322F37BF8471">Download report</a></td>
</tr>
</tbody>
</table>
<article>
<h2>Genomic resources</h2>
<p>
......
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