content: adds VEO reports table in genomics section

data/c19dp_genomics_sequences_submitted_by_country_summary.json

+{"entity":"Sequences submitted by country summary","timestamp":"2021-10-14 15:42:06.710428","links":{"self":{"href":"https:\/\/docs.google.com\/spreadsheets\/d\/e\/2PACX-1vRgouM0eO0qKvyi43S72V-x3U80vru5dOkvL9jI9lO0wYeY6A11TK5UPWlcYCCevlm7isZLzaiLfsIW\/pub?gid=677425267&single=true&output=tsv"},"origin":{"href":"https:\/\/docs.google.com\/spreadsheets\/d\/e\/2PACX-1vRgouM0eO0qKvyi43S72V-x3U80vru5dOkvL9jI9lO0wYeY6A11TK5UPWlcYCCevlm7isZLzaiLfsIW\/pub?gid=677425267&single=true&output=tsv"}},"countries_counter":116,"countries_summary":[{"country":"USA","sequences_submitted":"847462","raw_sequences_submitted":"484219"},{"country":"United Kingdom","sequences_submitted":"716063","raw_sequences_submitted":"1057489"},{"country":"Germany","sequences_submitted":"136105","raw_sequences_submitted":"320"},{"country":"Switzerland","sequences_submitted":"62735","raw_sequences_submitted":"2559"},{"country":"Australia","sequences_submitted":"13311","raw_sequences_submitted":"15629"},{"country":"Iceland","sequences_submitted":"5365","raw_sequences_submitted":""},{"country":"Slovakia","sequences_submitted":"2838","raw_sequences_submitted":"4862"},{"country":"India","sequences_submitted":"2061","raw_sequences_submitted":"4644"},{"country":"Estonia","sequences_submitted":"1681","raw_sequences_submitted":"1696"},{"country":"France","sequences_submitted":"1617","raw_sequences_submitted":"1363"},{"country":"Bahrain","sequences_submitted":"1583","raw_sequences_submitted":""},{"country":"Netherlands","sequences_submitted":"1558","raw_sequences_submitted":"6249"},{"country":"Kenya","sequences_submitted":"1223","raw_sequences_submitted":""},{"country":"Poland","sequences_submitted":"1218","raw_sequences_submitted":"1062"},{"country":"Spain","sequences_submitted":"1182","raw_sequences_submitted":"22135"},{"country":"New Zealand","sequences_submitted":"1126","raw_sequences_submitted":"5"},{"country":"Thailand","sequences_submitted":"1030","raw_sequences_submitted":"18"},{"country":"Egypt","sequences_submitted":"997","raw_sequences_submitted":"6"},{"country":"Lebanon","sequences_submitted":"931","raw_sequences_submitted":""},{"country":"Pakistan","sequences_submitted":"802","raw_sequences_submitted":"100"},{"country":"Japan","sequences_submitted":"740","raw_sequences_submitted":"131"},{"country":"Bangladesh","sequences_submitted":"665","raw_sequences_submitted":"237"},{"country":"Iran","sequences_submitted":"410","raw_sequences_submitted":"3"},{"country":"Chile","sequences_submitted":"383","raw_sequences_submitted":"9"},{"country":"Russia","sequences_submitted":"346","raw_sequences_submitted":"553"},{"country":"Hong Kong","sequences_submitted":"339","raw_sequences_submitted":"17"},{"country":"Italy","sequences_submitted":"333","raw_sequences_submitted":"1614"},{"country":"Puerto Rico","sequences_submitted":"304","raw_sequences_submitted":""},{"country":"Brazil","sequences_submitted":"302","raw_sequences_submitted":"1142"},{"country":"Ghana","sequences_submitted":"297","raw_sequences_submitted":""},{"country":"China","sequences_submitted":"292","raw_sequences_submitted":"439"},{"country":"Djibouti","sequences_submitted":"288","raw_sequences_submitted":""},{"country":"Iraq","sequences_submitted":"260","raw_sequences_submitted":"89"},{"country":"Seychelles","sequences_submitted":"257","raw_sequences_submitted":""},{"country":"Saudi Arabia","sequences_submitted":"199","raw_sequences_submitted":"16"},{"country":"Canada","sequences_submitted":"167","raw_sequences_submitted":"1173"},{"country":"Serbia","sequences_submitted":"152","raw_sequences_submitted":"1"},{"country":"Mexico","sequences_submitted":"147","raw_sequences_submitted":"934"},{"country":"Peru","sequences_submitted":"143","raw_sequences_submitted":"604"},{"country":"Israel","sequences_submitted":"125","raw_sequences_submitted":"1035"},{"country":"Austria","sequences_submitted":"124","raw_sequences_submitted":"747"},{"country":"Sierra Leone","sequences_submitted":"99","raw_sequences_submitted":""},{"country":"Greece","sequences_submitted":"98","raw_sequences_submitted":"4247"},{"country":"Zimbabwe","sequences_submitted":"98","raw_sequences_submitted":"753"},{"country":"Liechtenstein","sequences_submitted":"91","raw_sequences_submitted":""},{"country":"Turkey","sequences_submitted":"78","raw_sequences_submitted":"46"},{"country":"Tunisia","sequences_submitted":"77","raw_sequences_submitted":"6"},{"country":"Philippines","sequences_submitted":"75","raw_sequences_submitted":"73"},{"country":"Uzbekistan","sequences_submitted":"71","raw_sequences_submitted":""},{"country":"West Bank","sequences_submitted":"63","raw_sequences_submitted":""},{"country":"Taiwan","sequences_submitted":"61","raw_sequences_submitted":""},{"country":"Armenia","sequences_submitted":"48","raw_sequences_submitted":""},{"country":"Libya","sequences_submitted":"46","raw_sequences_submitted":""},{"country":"Argentina","sequences_submitted":"43","raw_sequences_submitted":"1"},{"country":"Malaysia","sequences_submitted":"42","raw_sequences_submitted":"55"},{"country":"Venezuela","sequences_submitted":"40","raw_sequences_submitted":""},{"country":"Hungary","sequences_submitted":"36","raw_sequences_submitted":""},{"country":"South Korea","sequences_submitted":"35","raw_sequences_submitted":"25"},{"country":"Myanmar","sequences_submitted":"30","raw_sequences_submitted":""},{"country":"Timor-Leste","sequences_submitted":"29","raw_sequences_submitted":"21"},{"country":"Jordan","sequences_submitted":"28","raw_sequences_submitted":"25"},{"country":"Uganda","sequences_submitted":"28","raw_sequences_submitted":""},{"country":"Czech Republic","sequences_submitted":"24","raw_sequences_submitted":"100"},{"country":"Finland","sequences_submitted":"23","raw_sequences_submitted":""},{"country":"Portugal","sequences_submitted":"22","raw_sequences_submitted":""},{"country":"Georgia","sequences_submitted":"21","raw_sequences_submitted":""},{"country":"Kazakhstan","sequences_submitted":"18","raw_sequences_submitted":""},{"country":"Gabon","sequences_submitted":"17","raw_sequences_submitted":""},{"country":"Denmark","sequences_submitted":"15","raw_sequences_submitted":"753"},{"country":"Morocco","sequences_submitted":"15","raw_sequences_submitted":"10"},{"country":"Uruguay","sequences_submitted":"14","raw_sequences_submitted":"6"},{"country":"Guinea","sequences_submitted":"13","raw_sequences_submitted":""},{"country":"Benin","sequences_submitted":"12","raw_sequences_submitted":""},{"country":"Malta","sequences_submitted":"12","raw_sequences_submitted":"10"},{"country":"Togo","sequences_submitted":"11","raw_sequences_submitted":""},{"country":"Nepal","sequences_submitted":"11","raw_sequences_submitted":"1"},{"country":"Viet Nam","sequences_submitted":"11","raw_sequences_submitted":""},{"country":"Guatemala","sequences_submitted":"10","raw_sequences_submitted":""},{"country":"Somalia","sequences_submitted":"10","raw_sequences_submitted":""},{"country":"Sweden","sequences_submitted":"10","raw_sequences_submitted":"5"},{"country":"Indonesia","sequences_submitted":"9","raw_sequences_submitted":""},{"country":"Jamaica","sequences_submitted":"8","raw_sequences_submitted":""},{"country":"Ethiopia","sequences_submitted":"7","raw_sequences_submitted":""},{"country":"Sri Lanka","sequences_submitted":"6","raw_sequences_submitted":""},{"country":"Qatar","sequences_submitted":"6","raw_sequences_submitted":"1065"},{"country":"Gambia","sequences_submitted":"6","raw_sequences_submitted":""},{"country":"South Africa","sequences_submitted":"5","raw_sequences_submitted":"7214"},{"country":"Belgium","sequences_submitted":"5","raw_sequences_submitted":"47"},{"country":"Ecuador","sequences_submitted":"4","raw_sequences_submitted":"7"},{"country":"Colombia","sequences_submitted":"4","raw_sequences_submitted":"1"},{"country":"Belize","sequences_submitted":"4","raw_sequences_submitted":""},{"country":"Nigeria","sequences_submitted":"4","raw_sequences_submitted":""},{"country":"Dominican Republic","sequences_submitted":"4","raw_sequences_submitted":"14"},{"country":"Guam","sequences_submitted":"3","raw_sequences_submitted":""},{"country":"Mali","sequences_submitted":"3","raw_sequences_submitted":""},{"country":"Cuba","sequences_submitted":"2","raw_sequences_submitted":""},{"country":"Singapore","sequences_submitted":"2","raw_sequences_submitted":"1"},{"country":"Belarus","sequences_submitted":"2","raw_sequences_submitted":""},{"country":"Romania","sequences_submitted":"2","raw_sequences_submitted":"1"},{"country":"Cambodia","sequences_submitted":"2","raw_sequences_submitted":"1"},{"country":"Croatia","sequences_submitted":"1","raw_sequences_submitted":"30"},{"country":"Zambia","sequences_submitted":"1","raw_sequences_submitted":""},{"country":"Cameroon","sequences_submitted":"1","raw_sequences_submitted":"1"},{"country":"Ireland","sequences_submitted":"","raw_sequences_submitted":"33473"},{"country":"Angola","sequences_submitted":"","raw_sequences_submitted":"1233"},{"country":"United Arab Emirates","sequences_submitted":"","raw_sequences_submitted":"1067"},{"country":"Malawi","sequences_submitted":"","raw_sequences_submitted":"958"},{"country":"Mozambique","sequences_submitted":"","raw_sequences_submitted":"545"},{"country":"not applicable","sequences_submitted":"","raw_sequences_submitted":"280"},{"country":"Latvia","sequences_submitted":"","raw_sequences_submitted":"133"},{"country":"not collected","sequences_submitted":"","raw_sequences_submitted":"96"},{"country":"NA","sequences_submitted":"","raw_sequences_submitted":"86"},{"country":"State of Palestine","sequences_submitted":"","raw_sequences_submitted":"69"},{"country":"missing","sequences_submitted":"","raw_sequences_submitted":"34"},{"country":"Not Applicable","sequences_submitted":"","raw_sequences_submitted":"32"},{"country":"Na","sequences_submitted":"","raw_sequences_submitted":"9"}]}
\ No newline at end of file

layouts/genomics/single.html

@@ -24,7 +24,12 @@
   <div class="tab-content mt-5">
     <div class="tab-pane fade active show" id='genomic-resources-content' role="tabpanel" aria-labelledby='genomic-resources-tab'>
       <article>
-        <h2>Spain sequencing efforts</h2>
+        <h2>Geographical source of SARS-CoV-2 sequence data </h2>
+        <p>
+          The world map and table below provide a snapshot of the number of SARS-CoV-2 raw sequences submitted by country.
+          <br />
+          The original source of data is the <a href="https://www.covid19dataportal.org/statistics" target="_blank">COVID-19 Data Portal</a> statistics section.
+        </p>
         <div class="d-block clearfix">
           <img src="/images/diagrams/raw_sequences_submitted_by_country.png" class="rounded float-left mr-5 d-block" style="max-width:50%" alt="Raw sequences submitted by Country">
           <table class="table table-responsive d-inline">
@@ -35,28 +40,89 @@
             <tbody>
               <tr>
                 <td>United Kingdom</td>
-                <td class="text-center">1,057,489</td>
+                <td>1,057,489</td>
               </tr>
               <tr>
                 <td>USA</td>
-                <td class="text-center">484,219</td>
+                <td>484,219</td>
               </tr>
               <tr>
                 <td>Ireland</td>
-                <td class="text-center">33,473</td>
+                <td>33,473</td>
               </tr>
               <tr>
                 <td>Spain</td>
-                <td class="text-center">22,135</td>
+                <td>22,135</td>
               </tr>
               <tr>
                 <td>Australia</td>
-                <td class="text-center">15,629</td>
+                <td>15,629</td>
               </tr>
             </tbody>
           </table>
         </div>
       </article>
+
+      <article>
+
+      </article>
+        <h2>VEO consortium reports</h2>
+        <p>
+          The <a href="https://www.veo-europe.eu/" target="_blank">VEO consortium</a> (Versatile Emerging infectious disease Observatory) submits monthly reports to the European Commission on mutations and variation in publicly shared SARS-CoV-2 raw sequencing data.
+          <br />
+          You can browse all previous VEO reports in the table below.
+          <br />
+          If you would like to receive the VEO reports straight to your inbox, please send an email to <a href="mailto:veo.europe@erasmusmc.nl">veo.europe@erasmusmc.nl</a> with ‘VEO COVID-19 Report’ in the subject line.
+        </p>
+        <table class="table table-responsive table-sm">
+          <thead>
+            <th>Report</th>
+            <th>News</th>
+            <th>Download</th>
+          </thead>
+          <tbody>
+            <tr>
+              <td>First report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={C8603A16-8104-475E-9E6B-985BCCB67136}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-v02.pdf?la=da&hash=C20457CBD60493484B3E0F799DC2384FECE724F3">Download report</a></td>
+            </tr>
+            <tr>
+              <td>Second report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={295B1E0E-FB34-4ADA-B8DB-17C125B12971}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-2-final.pdf?la=da&hash=04C7DECB4B7713D44CE13CC31BCD7D1BBD68A391">Download report</a></td>
+            </tr>
+            <tr>
+              <td>Third report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={E4321352-62C6-47A8-9977-EF88DA13A481}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-3-final.pdf?la=da&hash=FB7DFC9E426B97A92EAFA516F85CFDF8D0B04B4A">Download report</a></td>
+            </tr>
+            <tr>
+              <td>Fourth report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={F96C565D-D211-4BC3-A751-7330ED55CDB3}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-4-final.pdf?la=da&hash=1120416E0F29FC5209AC1E4BAB027E766FC6D576">Download report</a></td>
+            </tr>
+            <tr>
+              <td>Fifth report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={B114E6E9-F4D4-4900-BDD4-2C2E546C0EA5}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-5-final.pdf?la=da&hash=8A01A87944E2E4D4DC0665968DFB9AD5673E7BFA">Download report</a></td>
+            </tr>
+            <tr>
+              <td>Sixth report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={0AB6C30A-4CED-4F71-88D6-058998C2673E}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-6-final.pdf?la=da&hash=38280825E8C0274822FC35DAD0B658939A13DB5A">Download report</a></td>
+            </tr>
+            <tr>
+              <td>Seventh  report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={F636F235-DE3E-4BCC-8772-068017100945}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-7-final.pdf?la=da&hash=9571234B1BA6CC166DC2B20C99A403E1C0156710">Download report</a></td>
+            </tr>
+            <tr>
+              <td>Eight report</td>
+              <td><a href="https://www.veo-europe.eu/news/Nyhed?id={9F445038-C721-459F-9E90-CACF00FCC72E}" target="_blank">News</a></td>
+              <td><a href="https://www.veo-europe.eu/-/media/sites/veo-europe/library/veo-covid-19-variants-report-8-final.pdf?la=da&hash=ED6ECE05BFE6D0AD51B00EBB7E7A322F37BF8471">Download report</a></td>
+            </tr>
+          </tbody>
+        </table>
       <article>
         <h2>Genomic resources</h2>
         <p>