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Commit 1b9c6c20 authored by Albert Hornos Vidal's avatar Albert Hornos Vidal
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feat: split genomic resources subsection into context & resources

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layouts/genomics/single.html
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......@@ -4,10 +4,10 @@
<h1>{{ .Title }}</h1>
{{ .Content }}
<nav class="nav nav-pills nav-fill dp-nav-pills" role="tablist">
<a class="nav-item nav-link ml-2 mb-2 dp-background-color--hero active" id="genomic-resources-tab"
href='#genomic-resources-content' data-bs-toggle="tab" role="tab"
aria-controls='genomic-resources-content' aria-selected="false">
<h6 class="m-0">Genomic resources</h6>
<a class="nav-item nav-link ml-2 mb-2 dp-background-color--hero active" id="context-tab"
href='#context-content' data-bs-toggle="tab" role="tab"
aria-controls='context-content' aria-selected="false">
<h6 class="m-0">Context</h6>
</a>
<a class="nav-item nav-link ml-2 mb-2 dp-background-color--hero" id="viral-sequences-tab"
href='#viral-sequences-content' data-bs-toggle="tab" role="tab"
......@@ -19,10 +19,15 @@
aria-controls='host-sequences-content' aria-selected="false">
<h6 class="m-0">Host sequences</h6>
</a>
<a class="nav-item nav-link ml-2 mb-2 dp-background-color--hero" id="genomic-resources-tab"
href='#genomic-resources-content' data-bs-toggle="tab" role="tab"
aria-controls='genomic-resources-content' aria-selected="false">
<h6 class="m-0">Genomic resources</h6>
</a>
</nav>
<div class="tab-content mt-5">
<div class="tab-pane fade active show" id='genomic-resources-content' role="tabpanel" aria-labelledby='genomic-resources-tab'>
<div class="tab-pane fade active show" id='context-content' role="tabpanel" aria-labelledby='context-tab'>
<article>
<h2>Geographical source of SARS-CoV-2 sequence data </h2>
<p>
......@@ -64,8 +69,6 @@
</article>
<article>
</article>
<h2>VEO consortium reports</h2>
<p>
The <a href="https://www.veo-europe.eu/" target="_blank">VEO consortium</a> (Versatile Emerging infectious disease Observatory) submits monthly reports to the European Commission on mutations and variation in publicly shared SARS-CoV-2 raw sequencing data.
......@@ -123,17 +126,35 @@
</tr>
</tbody>
</table>
</article>
</div>
<div class="tab-pane fade" id='viral-sequences-content' role="tabpanel" aria-labelledby='viral-sequences-tab'>
<article>
<h2>Viral sequences</h2>
{{ partial "genomics/viral-sequences-table.html" . }}
</article>
</div>
<div class="tab-pane fade" id='host-sequences-content' role="tabpanel" aria-labelledby='host-sequences-tab'>
<article>
<h2>Host sequences</h2>
{{ partial "genomics/host-sequences-table.html" . }}
</article>
</div>
<div class="tab-pane fade" id='genomic-resources-content' role="tabpanel" aria-labelledby='genomic-resources-tab'>
<article>
<h2>Genomic resources</h2>
<h5>
<a target="_blank" href="https://nextstrain.org/groups/nextspain/ncov19-Spain">NextSpain COVID-19 interactive epidemiological map using Nextstrain.</a>
</h5>
<p>
<h5><a target="_blank" href="https://nextstrain.org/groups/nextspain/ncov19-Spain">NextSpain COVID-19 interactive epidemiological map using Nextstrain.</a></h5>
NextSpain COVID-19 shows the results obtained from the analysis of complete genome sequences of SARS-CoV-2 deposited in GISAID or other publicly accessible databases. The analyses are performed with the NextStrain engine to inform the scientific community and the general public about the genomic epidemiology of COVID-19 in Spain: <a target="_blank" href="http://seqcovid.csic.es">SeqCOVID Genomic epidemiology of COVID-19 in Spain</a>. The epidemiological map is built with this <a target="_blank" href="http://gitlab.com/fisabio-ngs/sars-cov2-mapping/-/tree/master/ncov19-Spain">code</a> and it is mantained by <a target="_blank" href="http://www.fisabio-ngs.com/en/">FISABIO Sequencing and Bioinformatics Service</a> and <a target="_blank" href="http://tgu.ibv.csic.es">Tuberculosis Genomics Unit (IBV-CSIC)</a>.
</p>
{{ partial "genomics/nextspain-iframe.html" }}
<br>
<br>
<h5>
<a target="_blank" href="http://nextstrain.clinbioinfosspa.es/SARS-COV-2-all">Interactive epidemiological map of SARS-CoV-2 in Andalusia using Nextstrain.</a>
</h5>
<p>
<h5><a target="_blank" href="http://nextstrain.clinbioinfosspa.es/SARS-COV-2-all">Interactive epidemiological map of SARS-CoV-2 in Andalusia using Nextstrain.</a></h5>
This map is part of <a target="_blank" href="http://clinbioinfosspa.es/projects/covseq/indexEng.html">the project</a> "Sequencing of the SARS-CoV-2 virus genome for the monitoring and management of the COVID-19 epidemic in Andalusia and the rapid generation of prognostic and response to treatment biomarkers". The consortium is made up of 14 hospitals and 5 Health Research Institutes from the Andalusia region, the Technical Office for Information Management, the Regional Management of Public Health (Epidemiological Surveillance and Occupational Health Service) and the Fundación Progreso y Salud (FPS). The epidemilogical map has been developed and is maintained by the <a target="_blank" href="http://clinbioinfosspa.es">Clinical Bioinformatics Area</a> at the FPS.
</p>
<a target="_blank" href="http://nextstrain.clinbioinfosspa.es/SARS-COV-2-all" title="Click to explore the tool">
......@@ -148,18 +169,6 @@
</div>
</article>
</div>
<div class="tab-pane fade" id='viral-sequences-content' role="tabpanel" aria-labelledby='viral-sequences-tab'>
<article>
<h2>Viral sequences</h2>
{{ partial "genomics/viral-sequences-table.html" . }}
</article>
</div>
<div class="tab-pane fade" id='host-sequences-content' role="tabpanel" aria-labelledby='host-sequences-tab'>
<article>
<h2>Host sequences</h2>
{{ partial "genomics/host-sequences-table.html" . }}
</article>
</div>
</div>
</main>
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