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Tutorial · Changes

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Update Tutorial authored May 22, 2024 by alabarga's avatar alabarga
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Tutorial.md
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......@@ -10,6 +10,10 @@
docker run --name demo_omop -e POSTGRES_PASSWORD=lollypop -e POSTGRES_USER=postgres -p 5432:5432 -v ${PWD}/postgres:/var/lib/postgresql/data -v ${PWD}/backup:/backup -d postgres
```
## OMOP-CDM vocabularies
Download [vocabularies](https://b2drop.bsc.es/index.php/s/3KALieLcQJ2gaiq)
## Generating Synthetic data
To generate synthetic data we use [Synthea<sup>TM</sup> patient generator](https://github.com/synthetichealth/synthea).
......@@ -31,7 +35,7 @@ To export the data in CSV format, you need to set the parameter `exporter.csv.ex
To generate different types of data with modules, one must use the `-m` option with the name of your modules. Check the page with an example [here](https://github.com/synthetichealth/synthea/wiki/The--M-Feature).
You can also download this [data.zip](https://github.com/alabarga/pybcn22-modern-data-stack/blob/main/synthea/data.zip)
You can also download this [synthea_demo_data.zip](https://b2drop.bsc.es/index.php/s/Eo2ydMGWBjLGjCS)
## Import synthetic data to a relational database
......
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