Commit c04719a4 authored by gsaxena's avatar gsaxena

Update readme.txt

parent 76bcf818
......@@ -152,6 +152,36 @@ TIME FOR WRITING FINAL FILE = 0.170324
TOTAL PROGRAM EXECUTION TIME = 3.99776
========================================================
(7) The simulation can produce .mat files and we produce at least 2 .mat files,
one at the beginning of the simulation and 1 at the end of the simulation. The
location where the files are produced can be controlled from inside the
./examples/tutorial1_BioFVM.cpp file.
For example:
=================================================================================================================
int main(int argc, char *argv[ ])
....
microenvironment.write_to_matlab( "/gpfs/projects/initial_concentration.mat", mpi_Rank, mpi_Size, mpi_Cart_comm );
...
=================================================================================================================
(8) This .mat file can be plotted using the Matlab software (or Octave -
we used Octave). The .m help scripts for plotting can be found in ./GS_BioFVM_X/
GS_BioFVM/matlab. Any of the scripts can be tried - we plotted using
(a) cross_section_colormap.m
(b) cross_section_surface.m
For example, inside (a) above, change file name from
===================================================
file_name='output_4.000000_0.000100_10.000000.mat';
===================================================
to
===================================================
file_name='initial_concentration.mat';
===================================================
and then execute the script.
####################################################
BioFVM: Finite Volume Solver for Biological Problems.
####################################################
......
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