Commit 54891887 authored by Arnau Montagud's avatar Arnau Montagud

Update README.md

parent 9e8c1824
......@@ -9,7 +9,7 @@ This repository can be cited with its own DOI: zenodo_DOI
A step-by step walkthrough has been added for two different examples.
The motivation of this work is that BioFVM (http://BioFVM.MathCancer.org) supports only on-node shared memory parallelism using OpenMP. We have developed BioFVM_X as it adds MPI to BioFVM to parallelize the core kernels of BioFVM using MPI. Some core kernels are: Domain Partitioning, Basic Agent Generation, Gaussian Profile building, File Writing, Direct Solver (Thomas' algorithm). Most of the MPI-based parallel functions are made available in BioFVM_parallel.cpp
The motivation of this work is that BioFVM (http://BioFVM.MathCancer.org) supports only on-node shared memory parallelism using OpenMP. We have developed BioFVM_X as it adds MPI to BioFVM to parallelize the core kernels of BioFVM using MPI. Some core kernels are: Domain Partitioning, Basic Agent Generation, Gaussian Profile building, File Writing, Direct Solver (Thomas' algorithm). Most of the MPI-based parallel functions are made available in `BioFVM_parallel.cpp`.
## Running the example tutorial1_BioFVM.cpp in ./examples/
......@@ -137,7 +137,7 @@ TOTAL PROGRAM EXECUTION TIME = 3.99776
```
8. The simulation can/will produce .mat files (MATLAB files) as outputs. We produce at least 2 .mat files, one at the beginning and the second at the end of the simulation. The location where the files are produced can be controlled from the `./examples/tutorial1_BioFVM.cpp` file (see below the relevant lines in `./example/tutorial1_BioFVM.cpp`).
**PLEASE MAKE SURE** If there are multiple calls to the function `write_to_matlab(...)`, then ALL the calls must contain the path at which the user wants to store/produce the .mat files.
**PLEASE MAKE SURE** that if there are multiple calls to the function `write_to_matlab(...)`, then ALL the calls contain the path at which the user wants to store/produce the .mat files.
For example:
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment