Update readme.txt

readme.txt

+####################################
 BioFVM_X is based on BioFVM v 1.1.6. 
+####################################
 
 + BioFVM (http://BioFVM.MathCancer.org) supports only on-node shared memory 
   parallelism using OpenMP.
@@ -22,6 +24,24 @@ BioFVM_X is based on BioFVM v 1.1.6.
       present (or the modules are loaded in a module environment)
   (4) Execute $ make tutorial1
       This results in an executable file "tutorial1" in the directory ./examples
+      
+      Example output:
+      
+bsc99102@login1:~/GS_BioFVM_X/GS_BioFVM> make tutorial1
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_vector.cpp 
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_matlab.cpp
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_utilities.cpp 
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_mesh.cpp 
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_microenvironment.cpp 
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_solvers.cpp 
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_basic_agent.cpp 
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_agent_container.cpp 
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_MultiCellDS.cpp
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c BioFVM_parallel.cpp
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -c pugixml.cpp
+mpic++ -march=native  -O2 -fomit-frame-pointer -mfpmath=both -fopenmp -m64 -std=c++11 -g  -o ./examples/tutorial1 ./examples/tutorial1_BioFVM.cpp BioFVM_vector.o BioFVM_matlab.o BioFVM_utilities.o BioFVM_mesh.o BioFVM_microenvironment.o BioFVM_solvers.o BioFVM_basic_agent.o BioFVM_agent_container.o BioFVM_MultiCellDS.o BioFVM_parallel.o  pugixml.o
+bsc99102@login1:~/GS_BioFVM_X/GS_BioFVM>
+      
   (5)  For the SLURM scheduler, the following script can be used:
  
 ============================================================================
@@ -65,8 +85,9 @@ total Voxels in X (or Y or Z) direction as (maxX-minX)/mesh_resolution =
 must be perfectly divisible by total number of MPI processes (in this case P=2).
 Thus, we have 100/2 = 50 Voxels per process. 
 
-
-BioFVM: Finite Volume Solver for Biological Problems. 
+####################################################
+BioFVM: Finite Volume Solver for Biological Problems.
+####################################################
 
 Version:      1.1.6
 Release date: 19 August 2017