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Variant Interaction Analysis (VIA) is an application for identifying genomic variant interactions related with complex diseases. It uses Multifactor Dimensionality Dimension (MDR), a non-parametric statistical method for detecting and characterizing nonlinear interactions. It runs in a singularity container using Apache Spark for distributing the work, Hadoop File System for distributing the data and Apache ZooKeeper for synchronization. It is coded in Python.

This repository contains Python scripts for "Network neighbors of viral targets and differentially expressed genes in COVID-19 are drug target candidates" by Carme Zambrana, Alexandros Xenos, René Bötcher, Noël Malod-Dognin, and Nataša Pržulj.

Python library to access FlowMaps database. Based on pymongo. Needs a direct connection to the Mongodb instance.

Data intensive science for everyone.

Set of python scripts to process and consolidate the data stored in the database.