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TransBioNet CNV Workflow

Small test program that computes Sod's shock tube problem in 2D using FEM techniques. Created to try out ideas for a matrix-free GPU compressible algorithm.

From github repository: https://github.com/LLNL/LULESH

Variant Interaction Analysis (VIA) is an application for identifying genomic variant interactions related with complex diseases. It uses Multifactor Dimensionality Dimension (MDR), a non-parametric statistical method for detecting and characterizing nonlinear interactions. It runs in a singularity container using Apache Spark for distributing the work, Hadoop File System for distributing the data and Apache ZooKeeper for synchronization. It is coded in Python.