Commit abfc068f authored by María Morales Martínez's avatar María Morales Martínez
Browse files

remove logs and add file

parent 8e7cb0cd
NameError in line 14 of /home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk:
name 'rep_peaks' is not defined
File "/home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk", line 14, in <module>
NameError in line 17 of /home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk:
name 'rep_beds' is not defined
File "/home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk", line 17, in <module>
NameError in line 17 of /home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk:
name 'rep_beds' is not defined
File "/home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk", line 17, in <module>
NameError in line 25 of /home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk:
name 'sel_beds' is not defined
File "/home/bscuser/3Dchromatin/pipelines/snakemake/processing.smk", line 25, in <module>
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 unzip_data
1
[Fri Jan 29 13:40:17 2021]
rule unzip_data:
input: /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF045CUG.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF434PWT.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF456NIF.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF711LQB.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF397EFT.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF744ORJ.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF093YFN.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF156RHD.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF987CBQ.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF436XTS.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF237OAY.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF628KOM.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF760EFQ.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF315NAV.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF084QDP.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF964FVB.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF642IBN.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF422MTS.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF443ZMH.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF202EZL.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF654ZZO.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF836LZM.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF344MEX.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF238YJA.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF160CEI.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF162HPV.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF851FNE.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF439CWL.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF997ZDN.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF668YOE.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF343GTP.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF736WAN.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF348GGB.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF385DSV.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF813VFV.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF408FCY.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF694ENI.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF053HKF.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF411ESN.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF808BIC.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF296RYM.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF250GSY.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF806NNI.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF997CKL.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF441MSJ.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF277AOQ.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF068IZP.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF098JFF.bed.gz, /home/bscuser/3Dchromatin/data/chip-seq/zip_marks/ENCFF558IKG.bed.gz
output: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF045CUG.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF744ORJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF093YFN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF156RHD.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF436XTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF443ZMH.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF202EZL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF654ZZO.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF238YJA.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF439CWL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF668YOE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF343GTP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF736WAN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF348GGB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF813VFV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF408FCY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF694ENI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF411ESN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF808BIC.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF296RYM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF441MSJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF277AOQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF098JFF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF558IKG.bed
jobid: 0
[Fri Jan 29 13:40:21 2021]
Finished job 0.
1 of 1 steps (100%) done
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T134017.353643.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 selected_beds
1
[Fri Jan 29 18:47:33 2021]
rule selected_beds:
input: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF045CUG.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF744ORJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF093YFN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF156RHD.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF436XTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF443ZMH.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF202EZL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF654ZZO.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF238YJA.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF439CWL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF668YOE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF343GTP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF736WAN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF348GGB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF813VFV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF408FCY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF694ENI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF411ESN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF808BIC.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF296RYM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF441MSJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF277AOQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF098JFF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF558IKG.bed
output: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/ENCFF808BIC.bed
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T184733.060625.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 selected_beds
1
[Fri Jan 29 18:48:42 2021]
rule selected_beds:
input: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF045CUG.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF744ORJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF093YFN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF156RHD.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF436XTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF443ZMH.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF202EZL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF654ZZO.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF238YJA.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF439CWL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF668YOE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF343GTP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF736WAN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF348GGB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF813VFV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF408FCY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF694ENI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF411ESN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF808BIC.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF296RYM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF441MSJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF277AOQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF098JFF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF558IKG.bed
output: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/ENCFF808BIC.bed
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T184841.970762.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 selected_beds
1
[Fri Jan 29 18:49:04 2021]
rule selected_beds:
input: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF045CUG.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF744ORJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF093YFN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF156RHD.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF436XTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF443ZMH.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF202EZL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF654ZZO.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF238YJA.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF439CWL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF668YOE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF343GTP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF736WAN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF348GGB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF813VFV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF408FCY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF694ENI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF411ESN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF808BIC.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF296RYM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF441MSJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF277AOQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF098JFF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF558IKG.bed
output: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/ENCFF808BIC.bed
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T184904.089126.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 selected_beds
1
[Fri Jan 29 18:55:07 2021]
rule selected_beds:
input: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF045CUG.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF744ORJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF093YFN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF156RHD.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF436XTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF443ZMH.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF202EZL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF654ZZO.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF238YJA.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF439CWL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF668YOE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF343GTP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF736WAN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF348GGB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF813VFV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF408FCY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF694ENI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF411ESN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF808BIC.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF296RYM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF441MSJ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF277AOQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF098JFF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/all/ENCFF558IKG.bed
output: /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/ENCFF808BIC.bed
jobid: 0
[Fri Jan 29 18:55:08 2021]
Finished job 0.
1 of 1 steps (100%) done
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T185506.874745.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 processing_file
1
[Fri Jan 29 19:13:54 2021]
rule processing_file:
input: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/hg38_NRE_filt5.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/ENCFF434PWT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/ENCFF084QDP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/ENCFF422MTS.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/ENCFF806NNI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/ENCFF344MEX.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/ENCFF162HPV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/ENCFF628KOM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/ENCFF315NAV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/ENCFF642IBN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/ENCFF160CEI.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/ENCFF397EFT.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/ENCFF456NIF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/ENCFF237OAY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/ENCFF760EFQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/ENCFF711LQB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/ENCFF836LZM.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/ENCFF987CBQ.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/ENCFF250GSY.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/ENCFF997ZDN.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/ENCFF053HKF.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/ENCFF385DSV.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/ENCFF997CKL.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/ENCFF068IZP.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/ENCFF851FNE.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/ENCFF964FVB.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/ENCFF808BIC.bed
output: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/hg38_NRE_filt5_clean.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/H3K79me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/H3K27ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/H3K18ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/H2BK120ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/H4K91ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/H2BK12ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/H3K4me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/H3K23ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/H3K56ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/H4K5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/H3K4ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/H2AK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/H3K14ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/H2BK20ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/H3K79me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/H2BK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/H3K27me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/H2BK15ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/H3K36me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/H3K23me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/H4K20me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/H3K4me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/H3K9ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/H4K8ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/H3K9me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/H3K4me2.bed
jobid: 0
[Fri Jan 29 19:14:04 2021]
Finished job 0.
1 of 1 steps (100%) done
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T191354.607809.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 statistics
1
[Fri Jan 29 19:39:22 2021]
rule statistics:
input: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/hg38_NRE_filt5_clean.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/H3K79me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/H3K27ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/H3K18ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/H2BK120ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/H4K91ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/H2BK12ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/H3K4me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/H3K23ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/H3K56ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/H4K5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/H3K4ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/H2AK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/H3K14ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/H2BK20ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/H3K79me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/H2BK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/H3K27me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/H2BK15ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/H3K36me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/H3K23me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/H4K20me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/H3K4me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/H3K9ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/H4K8ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/H3K9me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/H3K4me2.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.2500kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.1000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.5000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.InsideLAD.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.250kb.bed
output: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K18ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK120ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K91ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK12ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K56ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2AK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K14ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK20ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK15ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K36me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K20me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K8ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K18ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK120ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K91ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK12ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K56ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2AK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K14ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK20ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK15ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K36me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K20me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K8ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/plot/normalized_marks.png
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T193922.357629.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 statistics
1
[Fri Jan 29 19:40:49 2021]
rule statistics:
input: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/hg38_NRE_filt5_clean.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/H3K79me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/H3K27ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/H3K18ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/H2BK120ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/H4K91ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/H2BK12ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/H3K4me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/H3K23ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/H3K56ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/H4K5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/H3K4ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/H2AK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/H3K14ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/H2BK20ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/H3K79me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/H2BK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/H3K27me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/H2BK15ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/H3K36me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/H3K23me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/H4K20me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/H3K4me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/H3K9ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/H4K8ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/H3K9me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/H3K4me2.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.2500kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.1000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.5000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.InsideLAD.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.250kb.bed
output: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K18ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK120ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K91ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK12ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K56ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2AK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K14ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK20ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK15ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K36me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K20me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K8ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K18ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK120ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K91ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK12ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K56ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2AK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K14ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK20ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK15ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K36me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K20me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K8ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/plot/normalized_marks.png
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T194049.063476.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 statistics
1
[Fri Jan 29 19:41:48 2021]
rule statistics:
input: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/hg38_NRE_filt5_clean.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/H3K79me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/H3K27ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/H3K18ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/H2BK120ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/H4K91ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/H2BK12ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/H3K4me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/H3K23ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/H3K56ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/H4K5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/H3K4ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/H2AK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/H3K14ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/H2BK20ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/H3K79me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/H2BK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/H3K27me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/H2BK15ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/H3K36me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/H3K23me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/H4K20me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/H3K4me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/H3K9ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/H4K8ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/H3K9me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/H3K4me2.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.2500kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.1000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.5000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.InsideLAD.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.250kb.bed
output: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K18ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK120ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K91ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK12ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K56ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2AK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K14ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK20ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK15ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K36me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K20me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K8ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K18ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK120ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K91ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK12ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K56ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2AK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K14ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK20ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK15ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K36me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K20me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K8ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/plot/normalized_marks.png
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T194148.593529.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 statistics
1
[Fri Jan 29 19:48:45 2021]
rule statistics:
input: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/hg38_NRE_filt5_clean.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/H3K79me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/H3K27ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/H3K18ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/H2BK120ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/H4K91ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/H2BK12ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/H3K4me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/H3K23ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/H3K56ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/H4K5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/H3K4ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/H2AK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/H3K14ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/H2BK20ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/H3K79me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/H2BK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/H3K27me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/H2BK15ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/H3K36me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/H3K23me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/H4K20me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/H3K4me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/H3K9ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/H4K8ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/H3K9me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/H3K4me2.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.2500kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.1000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.5000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.InsideLAD.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.250kb.bed
output: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K18ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK120ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K91ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK12ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K56ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2AK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K14ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK20ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK15ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K36me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K20me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K8ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K18ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK120ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K91ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK12ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K56ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2AK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K14ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK20ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK15ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K36me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K20me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K8ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/plot/normalized_marks.png
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T194845.403791.snakemake.log
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 statistics
1
[Fri Jan 29 19:50:20 2021]
rule statistics:
input: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/hg38_NRE_filt5_clean.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me2/H3K79me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27ac/H3K27ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K18ac/H3K18ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK120ac/H2BK120ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K91ac/H4K91ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK12ac/H2BK12ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me3/H3K4me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23ac/H3K23ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K56ac/H3K56ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K5ac/H4K5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4ac/H3K4ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2AK5ac/H2AK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K14ac/H3K14ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK20ac/H2BK20ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K79me1/H3K79me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK5ac/H2BK5ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K27me3/H3K27me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H2BK15ac/H2BK15ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K36me3/H3K36me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K23me2/H3K23me2.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K20me1/H4K20me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me1/H3K4me1.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9ac/H3K9ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H4K8ac/H4K8ac.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K9me3/H3K9me3.bed, /home/bscuser/3Dchromatin/data/chip-seq/unzip_marks/selected/H3K4me2/H3K4me2.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.2500kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.1000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.5000kb.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.InsideLAD.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/lamin/lamin_B1/window/Lamin_B1.250kb.bed
output: /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K18ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK120ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K91ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK12ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K56ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2AK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K14ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK20ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K79me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK5ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K27me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H2BK15ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K36me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K23me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K20me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me1_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H4K8ac_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K9me3_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/values/H3K4me2_val.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K18ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK120ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K91ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK12ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K56ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2AK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K14ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK20ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K79me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK5ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K27me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H2BK15ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K36me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K23me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K20me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me1_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H4K8ac_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K9me3_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/statistics/H3K4me2_stats.bed, /home/bscuser/3Dchromatin/data/chromatin_beds/nre/hg38_NRE_filt5/Results/plot/normalized_marks.png
jobid: 0
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T195020.632935.snakemake.log
Building DAG of jobs...
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Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T195126.901609.snakemake.log
Building DAG of jobs...
Nothing to be done.
Complete log: /home/bscuser/3Dchromatin/pipelines/.snakemake/log/2021-01-29T195139.771344.snakemake.log
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