Commit e6f71ceb authored by Adrián Muñoz's avatar Adrián Muñoz Committed by lrodrin
Browse files

Param added to cnv_gridss

parent 9f6f3a6f
......@@ -157,6 +157,7 @@ workflow {
SUB_CNV_GRIDSS (
SUB_BAM_FILTERING.out.collect(),
samples,
reference_fasta,
indexFiles,
blacklist,
structural_variants_script,
......
......@@ -26,6 +26,7 @@ workflow SUB_CNV_GRIDSS {
bams
samples
reference_genome
indexs
max_len
min_len
min_q
......@@ -33,6 +34,7 @@ workflow SUB_CNV_GRIDSS {
main:
GRIDSS(bams,
reference_genome,
indexs,
blacklist)
STRUCTURAL_VARIANTS( GRIDSS.out, structural_variants_script )
GRIDSS_FILTER( gridss_filter_script, STRUCTURAL_VARIANTS.out, samples, max_len, min_len, min_q )
......
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