Commit b21e4d3d authored by amunoz's avatar amunoz Committed by lrodrin
Browse files

Updated merge_all script and final_filtering subworkflow

parent 9647b0bf
......@@ -13,10 +13,11 @@ include {
*/
workflow SUB_FINAL_FILTERING {
take:
input
cnv_results
merge_all_script
main:
UNION( final_filtering )
UNION( cnv_results )
MERGE( UNION.out, merge_all_script )
emit:
......
#!/bin/bash
INPUT_FILE=$0
INPUT_FILE=$1
OUTPUT_NAME=${INPUT_FILE/bed/sorted.merged.bed}
OUTPUT_FILE=$(echo "$OUTPUT_NAME" | sed "s/.*\///")
......
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