Commit 9647b0bf authored by lrodrin's avatar lrodrin
Browse files
parents e79224f4 248c89aa
......@@ -22,7 +22,8 @@ params {
samples = "data/samples_test.txt"
bed = "data/gencode.v19.genes.v7_model.patched_contigs.gtf.bed.*"
blacklist = "data/hg19-blacklist.v2.num.bed.gz"
tbi = "data/gencode.v19.genes.v7_model.patched_contigs.gtf.bed.gz.tbi"
//scripts
manta_filter_script = "templates/manta_filter.sh"
gridss_filter_script = "templates/gridss_filter.sh"
......
......@@ -27,6 +27,10 @@ workflow SUB_CNV_GRIDSS {
samples
reference_genome
indexs
blacklist
structural_variants_script
gridss_filter_script
collapse_script
max_len
min_len
min_q
......
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