Merge

5fdfff6f · Acivico · 73b2587e · 5fdfff6f · 5fdfff6f · 5fdfff6f
Commit 5fdfff6f authored May 10, 2022 by Acivico
--- a/INSTALL.md
+++ b/INSTALL.md
--- a/LICENSE
+++ b/LICENSE
--- a/README.md
+++ b/README.md
--- a/constraints.txt
+++ b/constraints.txt
--- a/requirements.txt
+++ b/requirements.txt
--- a/structuralvariants/.gitignore
+++ b/structuralvariants/.gitignore
--- a/structuralvariants/README.md
+++ b/structuralvariants/README.md
--- a/structuralvariants/cwl/abstract_operations/batch_parser.cwl
+++ b/structuralvariants/cwl/abstract_operations/batch_parser.cwl
--- a/structuralvariants/cwl/abstract_operations/bedops_union.cwl
+++ b/structuralvariants/cwl/abstract_operations/bedops_union.cwl
--- a/structuralvariants/cwl/abstract_operations/bgzip.cwl
+++ b/structuralvariants/cwl/abstract_operations/bgzip.cwl
--- a/structuralvariants/cwl/abstract_operations/bwa_index.cwl
+++ b/structuralvariants/cwl/abstract_operations/bwa_index.cwl
--- a/structuralvariants/cwl/abstract_operations/bwa_mem_paired.cwl
+++ b/structuralvariants/cwl/abstract_operations/bwa_mem_paired.cwl
--- a/structuralvariants/cwl/abstract_operations/bwa_mem_unpaired.cwl
+++ b/structuralvariants/cwl/abstract_operations/bwa_mem_unpaired.cwl
--- a/structuralvariants/cwl/abstract_operations/codex.cwl
+++ b/structuralvariants/cwl/abstract_operations/codex.cwl
--- a/structuralvariants/cwl/abstract_operations/codex_filter.cwl
+++ b/structuralvariants/cwl/abstract_operations/codex_filter.cwl
--- a/structuralvariants/cwl/abstract_operations/collapse.cwl
+++ b/structuralvariants/cwl/abstract_operations/collapse.cwl
--- a/structuralvariants/cwl/abstract_operations/exome_depth.cwl
+++ b/structuralvariants/cwl/abstract_operations/exome_depth.cwl
--- a/structuralvariants/cwl/abstract_operations/exome_depth_filter.cwl
+++ b/structuralvariants/cwl/abstract_operations/exome_depth_filter.cwl
--- a/structuralvariants/cwl/abstract_operations/fastp.cwl
+++ b/structuralvariants/cwl/abstract_operations/fastp.cwl
--- a/structuralvariants/cwl/abstract_operations/fastqc.cwl
+++ b/structuralvariants/cwl/abstract_operations/fastqc.cwl