Commit 5cdd0e69 authored by amunoz's avatar amunoz
Browse files

Updated bwa_index

parent 5abaf10d
/*
* Includes for bwa_index
*/
include {
SAMTOOLS_FAIDX
} from "../modules/samtools_faidx"
include {
BWA_INDEX
} from "../modules/bwa_index"
include {
SAMTOOLS_FAIDX
} from "../modules/samtools_faidx"
/*
* Subworkflow bwa_index
......@@ -16,11 +16,10 @@ workflow SUB_BWA_INDEX {
reference_fasta
main:
// TODO gunzip
SAMTOOLS_FAIDX(reference_fasta)
BWA_INDEX(reference_fasta)
SAMTOOLS_FAIDX(BWA_INDEX.out.reference_fasta)
emit:
fai = SAMTOOLS_FAIDX.out
indexs = BWA_INDEX.out
}
indexs = BWA_INDEX.out.indexs
}
\ No newline at end of file
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